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phpDocumentor 2

PHP documentation generator based on docblock parsing. phpDocumentor 2, result of the merge between the old phpDocumentor and DocBlox , sometimes referred to as phpdoc or phpdocu, is the current standard auto-documentation tool for the php language. Similar to Javadoc, and written in php, phpDocumentor can be used from the command line or a web interface to create professional documentation from php source code. phpDocumentor has support for linking between documentation, incorporating user level documents like tutorials and creation of highlighted source code with cross referencing to php general documentation.
phpDocumentor uses an extensive templating system to change your source code comments into human readable, and hence useful, formats. This system allows the creation of easy to read documentation in 15 different pre-designed HTML versions, PDF format, Windows Helpfile CHM format, and in Docbook XML. You can also create your own templates to match the look and feel of your project.