Cytoscape
Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of plugins are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
Cytoscape supports many use cases in molecular and systems biology, genomics, and proteomics: Load molecular and genetic interaction data sets in many formats Project and integrate global datasets and functional annotations Establish powerful visual mappings across these data Perform advanced analysis and modeling using Cytoscape plugins Visualize and analyze human-curated pathway datasets such as Reactome or KEGG.
